• PEAKS  The positional footprinting web server [1]
  • PALO  Protein ALignment Optimizer [2]
  • CIPHER  CodIng sequence Prediction using HExameRs [3]

    Related publications
    [1] Bellora, N., Farré, D., Albà M.M. (2007) PEAKS: identification of regulatory motifs by their position in DNA sequences. Bionformatics 15;23(2):243-4 (abstract).

    [2] Villanueva-Cañas, J. L., Laurie, S., Alba, M. M. (2013) Improving genome-wide scans of positive selection by using isoforms of similar length. Genome Biology and Evolution 5(2):457-67 (abstract).

    [3] Ruiz-Orera, J., Verdaguer-Grau, P., Villanueva-Cañas, J. L., Messeguer, X., Alba, M. M. (2018) Translation of neutrally evolving peptides provides a basis for de novo gene evolution. Nat Ecol Evol. Mar 19 2018.(abstract).