CIPHER

CodIng sequence Prediction using HExameRs

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CIPHER is a program for the prediction of coding sequences in transcripts. It calculates the coding score of each open reading frame (ORF) using a metric based on hexanucleotide frequencies (see Additional Information). It is specially well-suited to discover new small translated proteins.

Choose your species (or closest one):

Human
Mouse
Zebrafish
Arabidopsis
Yeast

Choose the p-value threshold:

0.05
0.01
0.005

Choose the minimum protein length:

24 aminoacids
60 aminoacids

Choose a method to select ORFs in your sequences

Longest ORF
All ORFs

Please provide a file here:
(FASTA format)