Publication List

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2019

Marina Reixachs-Sole, Jorge Ruiz-Orera, M.Mar Albà, Eduardo Eyras

Ribosome profiling at isoform level reveals an evolutionary conserved impact of differential splicing on the proteome (Article)

bioRxiv, March 19, 2019.

(Abstract | Links | BibTeX | Tags: human, isoform, mouse, nervous system, ribosome profiling)

2018

Jorge Ruiz-Orera, Pol Grau-Verdaguer, José Luis Villanueva-Cañas, Xavier Messeguer, M.Mar Albà

Translation of neutrally evolving peptides provides a basis for de novo gene evolution (Article)

Nature Ecology and Evolution, 2 pp. 890–896, 2018.

(Abstract | Links | BibTeX | Tags: codon usage bias, de novo gene, natural selection, ribosome profiling)

2017

Jorge Ruiz-Orera, José Luis Villanueva-Cañas, William Blevins, M.Mar Albà

De novo gene evolution: How do we transition from non-coding to coding? (Conference)

PeerJ preprints 5 (e3031v2), 2017, (The SMBE 2017 Collection).

(Abstract | Links | BibTeX | Tags: de novo gene, long non-coding RNA, Ribo-Seq, ribosome profiling)

2016

Jorge Ruiz-Orera, Pol Verdaguer-Grau, José Luis Villanueva-Cañas, Xavier Messeguer, M Mar Albà

Functional and non-functional classes of peptides produced by long non-coding RNAs (Article)

bioRxiv, 2016, ISBN: http://dx.doi.org/10.1101/064915 .

(Abstract | Links | BibTeX | Tags: long non-coding RNA, micropeptide, mouse, ribosome profiling, smORF, translation)

2015

Ruiz-Orera, Jorge, Hernandez-Rodriguez, Jessica, Chiva, Cristina, Sabidó, Eduard, Kondova, Ivanela, Bontrop, Ronald, Marqués-Bonet, Tomàs, Albà, M.Mar

Origins of de novo genes in human and chimpanzee (Article)

Plos Genetics, 11 (12), pp. e1005721, 2015.

(Links | BibTeX | Tags: chimpanzee, de novo gene, Evolution, Humans, lncRNA, Promoter, proteomics, ribosome profiling, RNA-Seq, transcription factor binding site, transcriptomics)