Publication List

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2018

Jorge Ruiz-Orera, Pol Grau-Verdaguer, José Luis Villanueva-Cañas, Xavier Messeguer, M.Mar Albà

Translation of neutrally evolving peptides provides a basis for de novo gene evolution (Article)

Nature Ecology and Evolution, 2 pp. 890–896, 2018.

(Abstract | Links | BibTeX | Tags: codon usage bias, de novo gene, natural selection, ribosome profiling)

2017

José Luis Villanueva-Cañas, Jorge Ruiz-Orera, M.Isabel Agea, Maria Gallo, David Andreu, M.Mar Albà

New genes and functional innovation in mammals (Article)

Genome Biology and Evolution, 9 pp. 1886–1900, 2017.

(Abstract | Links | BibTeX | Tags: de novo gene, innovation, mammal, protein function)

Jorge Ruiz-Orera, José Luis Villanueva-Cañas, William Blevins, M.Mar Albà

De novo gene evolution: How do we transition from non-coding to coding? (Conference)

PeerJ preprints 5 (e3031v2), 2017, (The SMBE 2017 Collection).

(Abstract | Links | BibTeX | Tags: de novo gene, long non-coding RNA, Ribo-Seq, ribosome profiling)

Willam Blevins, M.Mar Albà, Lucas Carey

Comparative transcriptomics and ribo-seq: Looking at de novo gene emergence in Saccharomycotina (Conference)

PeerJ preprints 5 (e3030v1), 2017, (The SMBE 2017 Collection).

(Abstract | BibTeX | Tags: de novo gene, yeast)

Tomislav Domazet-Lošo, Anne-Ruxandra Carvunis, M.Mar Albà, Martin Sebastijan Šestak, Robert Bakarić, Rafik Neme, Diethard Tautz

No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution (Article)

Molecular Biology and Evolution, doi: 10.1093/molbev/msw284 2017.

(Abstract | Links | BibTeX | Tags: BLAST, de novo gene, Homology, Sequence Analysis)

2015

Ruiz-Orera, Jorge, Hernandez-Rodriguez, Jessica, Chiva, Cristina, Sabidó, Eduard, Kondova, Ivanela, Bontrop, Ronald, Marqués-Bonet, Tomàs, Albà, M.Mar

Origins of de novo genes in human and chimpanzee (Article)

Plos Genetics, 11 (12), pp. e1005721, 2015.

(Links | BibTeX | Tags: chimpanzee, de novo gene, Evolution, Humans, lncRNA, Promoter, proteomics, ribosome profiling, RNA-Seq, transcription factor binding site, transcriptomics)