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Tomislav Domazet-Lošo, Anne-Ruxandra Carvunis, M.Mar Albà, Martin Sebastijan Šestak, Robert Bakarić, Rafik Neme, Diethard Tautz

No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution (Article)

Molecular Biology and Evolution, doi: 10.1093/molbev/msw284 2017.

(Abstract | Links | BibTeX | Tags: BLAST, de novo gene, Homology, Sequence Analysis)


Albà, M Mar, Castresana, Jose

On homology searches by protein Blast and the characterization of the age of genes. (Article)

BMC evolutionary biology, 7 pp. 53, 2007, ISSN: 1471-2148.

(Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Computational Biology, Databases, Evolution, Genes, Humans, Molecular, Phylogeny, Protein, Sequence Analysis, Sequence Homology)

Bellora, Nicolás, Farré, Domènec, Mar Albà, M

PEAKS: identification of regulatory motifs by their position in DNA sequences. (Article)

Bioinformatics (Oxford, England), 23 (2), pp. 243–4, 2007, ISSN: 1367-4811.

(Abstract | Links | BibTeX | Tags: Algorithms, Automated, Automated: methods, Base Sequence, Chromosome Mapping, Chromosome Mapping: methods, DNA, DNA: genetics, DNA: methods, Molecular Sequence Data, Nucleic Acid, Nucleic Acid: genetics, Pattern Recognition, Regulatory Sequences, Sequence Alignment, Sequence Alignment: methods, Sequence Analysis, Software, Transcriptional Activation, Transcriptional Activation: genetics)


Mularoni, Loris, Guigó, Roderic, Albà, M Mar

Mutation patterns of amino acid tandem repeats in the human proteome. (Article)

Genome biology, 7 (4), pp. R33, 2006, ISSN: 1465-6914.

(Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid Substitution, Amino Acid: genetics, Codon, Expressed Sequence Tags, Genetic, Humans, Mutation, Polymorphism, Protein, Proteome, Proteome: genetics, Repetitive Sequences, Sequence Analysis)


Albà, M Mar, Castresana, Jose

Inverse relationship between evolutionary rate and age of mammalian genes. (Article)

Molecular biology and evolution, 22 (3), pp. 598–606, 2005, ISSN: 0737-4038.

(Abstract | Links | BibTeX | Tags: Animals, DNA, Evolution, Genome, human, Humans, Mice, Molecular, Sequence Analysis)


Gibbs, Richard A, Et al.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution. (Article)

Nature, 428 (6982), pp. 493–521, 2004, ISSN: 1476-4687.

(Abstract | Links | BibTeX | Tags: Animals, Base Composition, Centromere, Centromere: genetics, Chromosomes, CpG Islands, CpG Islands: genetics, DNA, DNA Transposable Elements, DNA Transposable Elements: genetics, Evolution, Gene Duplication, Genome, Genomics, Humans, Inbred BN, Inbred BN: genetics, Introns, Introns: genetics, Male, Mammalian, Mammalian: genetics, Mice, Mitochondrial, Mitochondrial: genetics, Models, Molecular, Mutagenesis, Nucleic Acid, Nucleic Acid: genetics, Polymorphism, Rats, Regulatory Sequences, Retroelements, Retroelements: genetics, RNA, RNA Splice Sites, RNA Splice Sites: genetics, Sequence Analysis, Single Nucleotide, Single Nucleotide: genetics, Telomere, Telomere: genetics, Untranslated, Untranslated: genetics)


Albà, M Mar, Laskowski, Roman A, Hancock, John M

Detecting cryptically simple protein sequences using the SIMPLE algorithm. (Article)

Bioinformatics (Oxford, England), 18 (5), pp. 672–8, 2002, ISSN: 1367-4803.

(Abstract | Links | BibTeX | Tags: Algorithms, Amino Acid, Amino Acid Sequence, Amino Acid: genetics, Databases, Genetic, Genetic Variation, Internet, Minisatellite Repeats, Minisatellite Repeats: genetics, Models, Molecular Sequence Data, Protein, Protein: methods, Proteins, Proteins: chemistry, Repetitive Sequences, Saccharomyces cerevisiae, Saccharomyces cerevisiae: genetics, Sensitivity and Specificity, Sequence Analysis, Sequence Homology, Software, Statistical)