Publication List

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Toll-Riera, Macarena, Bostick, David, Albà, M Mar, Plotkin, Joshua B

Structure and age jointly influence rates of protein evolution. (Article)

PLoS computational biology, 8 (5), pp. e1002542, 2012, ISSN: 1553-7358.

(Abstract | Links | BibTeX | Tags: Animals, Binding Sites, Computational Biology, Eukaryota, Evolution, Humans, Mice, Molecular, Protein Conformation, Protein Stability, Proteins, Proteins: chemistry, Proteins: genetics, Proteins: metabolism, Solvents)


Albà, M Mar, Castresana, Jose

On homology searches by protein Blast and the characterization of the age of genes. (Article)

BMC evolutionary biology, 7 pp. 53, 2007, ISSN: 1471-2148.

(Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Computational Biology, Databases, Evolution, Genes, Humans, Molecular, Phylogeny, Protein, Sequence Analysis, Sequence Homology)


Furney, Simon J, Albà, M Mar, López-Bigas, Núria

Differences in the evolutionary history of disease genes affected by dominant or recessive mutations. (Article)

BMC genomics, 7 pp. 165, 2006, ISSN: 1471-2164.

(Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Caenorhabditis elegans, Caenorhabditis elegans: genetics, Computational Biology, Conserved Sequence, Dominant, Essential, Evolution, Genes, Genetic, Genetic Diseases, Genetic Structures, Humans, Inborn, Inborn: classification, Inborn: genetics, Mice, Molecular, Mutation, Pan troglodytes, Pan troglodytes: genetics, Recessive, Selection, Sequence Homology)


Albà, M Mar, Guigó, Roderic

Comparative analysis of amino acid repeats in rodents and humans. (Article)

Genome research, 14 (4), pp. 549–54, 2004, ISSN: 1088-9051.

(Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid: genetics, Amino Acid: physiology, Animals, Chromosome Mapping, Chromosome Mapping: methods, Chromosome Mapping: statistics & numerical data, Computational Biology, Computational Biology: methods, Computational Biology: statistics & numerical data, GC Rich Sequence, GC Rich Sequence: genetics, Humans, Mice, Proteins, Proteins: chemistry, Proteins: genetics, Proteins: physiology, Rats, Repetitive Sequences, Trinucleotide Repeats, Trinucleotide Repeats: genetics)

Castresana, Jose, Guigó, Roderic, Albà, M Mar

Clustering of genes coding for DNA binding proteins in a region of atypical evolution of the human genome. (Article)

Journal of molecular evolution, 59 (1), pp. 72–9, 2004, ISSN: 0022-2844.

(Abstract | Links | BibTeX | Tags: Base Composition, Base Composition: genetics, Chromatin, Chromatin: metabolism, Chromosomes, Computational Biology, Databases, DNA-Binding Proteins, DNA-Binding Proteins: genetics, DNA-Binding Proteins: metabolism, Evolution, Genetic, Genome, human, Humans, Introns, Introns: genetics, Models, Molecular, Multigene Family, Multigene Family: genetics, Pair 19, Pair 19: genetics, Phylogeny, Zinc Fingers, Zinc Fingers: genetics)


Messeguer, Xavier, Escudero, Ruth, Farré, Domènec, Núñez, Oscar, Martínez, Javier, Albà, M Mar

PROMO: detection of known transcription regulatory elements using species-tailored searches. (Article)

Bioinformatics (Oxford, England), 18 (2), pp. 333–4, 2002, ISSN: 1367-4803.

(Abstract | Links | BibTeX | Tags: Animals, Binding Sites, Binding Sites: genetics, Computational Biology, DNA, DNA: genetics, DNA: metabolism, Humans, Software, Species Specificity, Transcription Factors, Transcription Factors: metabolism)