Publication List

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2010

Mularoni, Loris, Ledda, Alice, Toll-Riera, Macarena, Albà, M Mar

Natural selection drives the accumulation of amino acid tandem repeats in human proteins. (Article)

Genome research, 20 (6), pp. 745–54, 2010, ISSN: 1549-5469.

(Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid Sequence, Amino Acids, Amino Acids: chemistry, Amino Acids: genetics, Animals, Genetic, Humans, Molecular Sequence Data, Proteins, Proteins: chemistry, Proteins: genetics, Repetitive Sequences, Selection, Sequence Homology)

2007

Mularoni, Loris, Veitia, Reiner A, Albà, M Mar

Highly constrained proteins contain an unexpectedly large number of amino acid tandem repeats. (Article)

Genomics, 89 (3), pp. 316–25, 2007, ISSN: 0888-7543.

(Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid Sequence, Animals, Complementary, Conserved Sequence, DNA, Evolution, Genetic, Humans, Mice, Molecular, Point Mutation, Proteins, Proteins: chemistry, Proteins: genetics, Repetitive Sequences, Selection, Trinucleotide Repeats)

Albà, M Mar, Castresana, Jose

On homology searches by protein Blast and the characterization of the age of genes. (Article)

BMC evolutionary biology, 7 pp. 53, 2007, ISSN: 1471-2148.

(Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Computational Biology, Databases, Evolution, Genes, Humans, Molecular, Phylogeny, Protein, Sequence Analysis, Sequence Homology)

Albà, M M, Tompa, P, Veitia, R A

Amino acid repeats and the structure and evolution of proteins. (Article)

Genome dynamics, 3 pp. 119–30, 2007, ISSN: 1660-9263.

(Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Base Composition, Evolution, Humans, Molecular, Open Reading Frames, Open Reading Frames: genetics, Peptides, Peptides: chemistry, Proteins, Proteins: chemistry, Proteins: genetics, Repetitive Sequences)

2006

Mularoni, Loris, Guigó, Roderic, Albà, M Mar

Mutation patterns of amino acid tandem repeats in the human proteome. (Article)

Genome biology, 7 (4), pp. R33, 2006, ISSN: 1465-6914.

(Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid Substitution, Amino Acid: genetics, Codon, Expressed Sequence Tags, Genetic, Humans, Mutation, Polymorphism, Protein, Proteome, Proteome: genetics, Repetitive Sequences, Sequence Analysis)

Furney, Simon J, Albà, M Mar, López-Bigas, Núria

Differences in the evolutionary history of disease genes affected by dominant or recessive mutations. (Article)

BMC genomics, 7 pp. 165, 2006, ISSN: 1471-2164.

(Abstract | Links | BibTeX | Tags: Amino Acid, Animals, Caenorhabditis elegans, Caenorhabditis elegans: genetics, Computational Biology, Conserved Sequence, Dominant, Essential, Evolution, Genes, Genetic, Genetic Diseases, Genetic Structures, Humans, Inborn, Inborn: classification, Inborn: genetics, Mice, Molecular, Mutation, Pan troglodytes, Pan troglodytes: genetics, Recessive, Selection, Sequence Homology)

2004

Huang, Hui, Winter, Eitan E, Wang, Huajun, Weinstock, Keith G, Xing, Heming, Goodstadt, Leo, Stenson, Peter D, Cooper, David N, Smith, Douglas, Albà, M Mar, Ponting, Chris P, Fechtel, Kim

Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes. (Article)

Genome biology, 5 (7), pp. R47, 2004, ISSN: 1465-6914.

(Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid: genetics, Animal, Animals, Chromosome Mapping, Chromosome Mapping: methods, Conserved Sequence, Conserved Sequence: genetics, Disease Models, Evolution, Fishes, Fishes: genetics, Fungal, Fungal: genetics, Genes, Genes: genetics, Genes: physiology, Genetic, Genetic Diseases, Genome, Helminth, Helminth: genetics, human, Humans, Inborn, Inborn: genetics, Inborn: physiopathology, Insect, Insect: genetics, Mice, Molecular, Mutagenesis, Mutagenesis: genetics, Nucleic Acid, Nucleotides, Nucleotides: genetics, Point Mutation, Point Mutation: genetics, Rats, Repetitive Sequences, Selection, Sequence Homology, Trinucleotide Repeat Expansion, Trinucleotide Repeat Expansion: genetics)

Albà, M Mar, Guigó, Roderic

Comparative analysis of amino acid repeats in rodents and humans. (Article)

Genome research, 14 (4), pp. 549–54, 2004, ISSN: 1088-9051.

(Abstract | Links | BibTeX | Tags: Amino Acid, Amino Acid: genetics, Amino Acid: physiology, Animals, Chromosome Mapping, Chromosome Mapping: methods, Chromosome Mapping: statistics & numerical data, Computational Biology, Computational Biology: methods, Computational Biology: statistics & numerical data, GC Rich Sequence, GC Rich Sequence: genetics, Humans, Mice, Proteins, Proteins: chemistry, Proteins: genetics, Proteins: physiology, Rats, Repetitive Sequences, Trinucleotide Repeats, Trinucleotide Repeats: genetics)

2002

Albà, M Mar, Laskowski, Roman A, Hancock, John M

Detecting cryptically simple protein sequences using the SIMPLE algorithm. (Article)

Bioinformatics (Oxford, England), 18 (5), pp. 672–8, 2002, ISSN: 1367-4803.

(Abstract | Links | BibTeX | Tags: Algorithms, Amino Acid, Amino Acid Sequence, Amino Acid: genetics, Databases, Genetic, Genetic Variation, Internet, Minisatellite Repeats, Minisatellite Repeats: genetics, Models, Molecular Sequence Data, Protein, Protein: methods, Proteins, Proteins: chemistry, Repetitive Sequences, Saccharomyces cerevisiae, Saccharomyces cerevisiae: genetics, Sensitivity and Specificity, Sequence Analysis, Sequence Homology, Software, Statistical)