Software
- PEAKS The positional footprinting web server
PEAKS can be used to identify significant motif positional biases in DNA sequences. - PROMO v 3.0
PROMO allows the prediction of putative transcription factor binding sites in one or several sequences. - Virus Database VIDA
VIDA is an online database for the classification of virus proteins into families. It contains alignments of conserved domains, and consistent functional and taxonomic annotations. - SIMPLE v 3.0 SIMPLE v.3.0, an implementation of the SIMPLE algorithm, can be used to measure the amount of relative sequence simplicity both in DNA and protein sequences, and retrieve frequently occurring repeat motifs.
see also: SIMPLE v 4.0 , at MRC Harwell